{"id":5704,"date":"2013-05-27T18:12:21","date_gmt":"2013-05-27T23:12:21","guid":{"rendered":"http:\/\/wholehealthchicago.com\/?p=5704"},"modified":"2022-03-21T15:01:09","modified_gmt":"2022-03-21T20:01:09","slug":"the-care-and-feeding-of-your-microbiome","status":"publish","type":"post","link":"https:\/\/wholehealthchicago.com\/blog\/2013\/05\/27\/the-care-and-feeding-of-your-microbiome","title":{"rendered":"The Care and Feeding of Your Microbiome"},"content":{"rendered":"\n<p>If you read the history of alternative medicine in the US, you\u2019ll be as intrigued as I was by its preoccupation with your gastrointestinal system and feces. Diet, digestion, absorption, elimination, and possessing a wondrous \u201cinner hygiene\u201d were recurring themes originating in the late 19<sup>th<\/sup> century, when Kellogg\u2019s cereals were the mainstay health food at Michigan\u2019s Battle Creek Sanitarium, best eaten in conjunction with your daily enema.<\/p>\n\n\n\n<p>Because these topics were favored by alternative physicians such as chiropractors, naturopaths, and colon therapists, they were deliberately ignored or regarded with actual hostility by conventionally trained physicians. I well remember the chief of medicine calling me into his office when he learned I was opening an integrative center and snarling something like, \u201cSo now you\u2019re going to be one of those colon-cleaning candida quacks,\u201d his alliteration not as poetic as my own.<\/p>\n\n\n\n<p>Even though I\u2019d been an internist for 20 years before opening WholeHealth Chicago, I readily acknowledged I\u2019d never come across such diagnoses as intestinal dysbiosis (intestinal bacterial imbalance), leaky gut syndrome (intestinal hyperpermeability), food sensitivities as opposed to food allergies, or chronic diseases caused by apparently harmless parasites like blastocystis and candida.<\/p>\n\n\n\n<p>Nor did I know that chiropractors and naturopaths had for years routinely ordered tests measuring the efficiency of the digestive system from a lab I\u2019d also never heard of, called Great Smokies Diagnostic.<\/p>\n\n\n\n<p>As I speedily filled in what I considered a serious gap in my education, I kept wondering why these topics were simply never mentioned in medical school or residency. Conversations about this with gastroenterologist friends were really disappointing. Their ignorance seemed both willful and deliberate, as if it would be embarrassing to have some shared expertise in a field a chiropractor also knew. They\u2019re still my friends, but, sadly, they\u2019re still clueless. Young physicians just out of training stare at you blankly if you say \u201cleaky gut\u201d or \u201cdysbiosis,\u201d though by now just about everyone in conventional medicine finally agrees that taking probiotics after antibiotics probably can\u2019t hurt.<\/p>\n\n\n\n<h2 class=\"wp-block-heading\"><b>Based on the numbers, you are 10% human, 90% bacteria <\/b><\/h2>\n\n\n\n<p>Maybe if all of them perused the New York Times Magazine last Sunday, they\u2019d have an attitude change. <a href=\"https:\/\/www.nytimes.com\/2013\/05\/19\/magazine\/say-hello-to-the-100-trillion-bacteria-that-make-up-your-microbiome.html?ref=magazine&amp;_r=0\" target=\"_blank\" rel=\"noreferrer noopener nofollow\">Some of My Best Friends Are Germs<\/a> by Michael Pollan (author of <i>The Omnivore\u2019s Dilemma<\/i> and other titles) is an elegant article on our internal <a href=\"https:\/\/wholehealthchicago.com\/blog\/2021\/05\/16\/gut-restoration-repairing-your-microbiome\" target=\"_blank\" rel=\"noreferrer noopener\">microbiome<\/a>, that intestinal array of the several hundred microbial species whose population is currently pegged at about 100 trillion and, weighing in at about two pounds, exceeds the total number of cells in your very own body by a factor of ten.<\/p>\n\n\n\n<p>Read the Pollan piece (virtually predicted by chiropractors and naturopaths throughout the 20<sup>th<\/sup> century) to better grasp these ideas:<\/p>\n\n\n\n<ul class=\"wp-block-list\"><li>The bacteria in our gut start growing inside our intestines when we\u2019re born, the mix of bacteria pretty much determined by what we eat (breast or bottle makes a difference) and who we live with, pets included.<\/li><li>Good bacteria are related to diet. Having them improves digestion and absorption of food and enhances our immune systems. Good bacteria are also involved in our ability to manufacture vitamins, enzymes, and neurotransmitters (brain chemicals) like feel-good serotonin.<\/li><li>Bad bacteria are also diet-related, a product of junk foods, processed foods, and foods treated with chemicals and antibiotics. They rarely cause actual infection, but rather inflame and damage the delicate intestinal lining. This constant low-level damage leads to the intestine becoming excessively permeable to digested food molecules (leaky gut), which then predisposes us to food sensitivities, weight gain, diabetes, a variety of autoimmune diseases including inflammatory bowel disease (Crohn\u2019s, ulcerative colitis), and chronic hives and other chronic skin conditions like psoriasis.<\/li><li>You didn\u2019t misread the weight-gain part. Many chronically overweight people carry a load of intestinal bacteria that actually cause excessive amounts of food to be absorbed into the body. When the intestines of underweight mice were inoculated with the bacteria of obese mice, the underweight mice became obese and developed early diabetes.<\/li><li>The damage from bad bacteria and the subsequent intestinal hyperpermeability can trigger a steady state of body-wide chronic inflammation. One result is your arteries become inflamed, making them susceptible to premature buildup of cholesterol plaques. We can counter some of this with a daily anti-inflammatory like aspirin or turmeric, but keep reading for a list of changes you can make to avoid the damaging bacteria in the first place.<\/li><li>When you take a single course of antibiotics, the imbalance of bacteria that occurs quickly restores itself to baseline status, meaning you get your old microbiome back. Full recovery is more difficult, however, after taking multiple courses of antibiotics. Unfortunately some people have been on dozens of antibiotics throughout their lives and we don\u2019t really know the long-term health effects of this.<\/li><li>In rare cases, a truly villainous intestinal bacteria can kill you. The antibiotic-resistant C. difficile, which can emerge in hospital patients post-antibiotic, is responsible for 14,000 US deaths annually.<\/li><li>You\u2019ll likely be reading more about people undergoing fecal transplants to normalize their microbiome. This procedure is being done by some gastroenterologists as a treatment for drug-resistant ulcerative colitis and Crohn\u2019s (personally, I\u2019d take the transplant first over the immune-suppressing drugs). Currently, the going rate is about $10,000, which strikes me as routine medical greed. I know several patients who simply managed it at home. Like everything else in the world, instructions for a DIY fecal transplant are on YouTube.<\/li><\/ul>\n\n\n\n<p>You can create and nurture a diverse and healthy microbiome by:<\/p>\n\n\n\n<ul class=\"wp-block-list\"><li><b>Avoiding antibiotics unless absolutely necessary<\/b>, and then taking them for the shortest period possible. Eating antibiotic-free foods is a good choice too. <a href=\"https:\/\/www.npr.org\/blogs\/thesalt\/2013\/04\/08\/176606069\/surprise-organic-apples-and-pears-aren-t-free-of-antibiotics\" target=\"_blank\" rel=\"noreferrer noopener nofollow\">Some 80% of all antibiotics used in the US are given to livestock<\/a>, mainly to help them put on weight (some fruit trees are also sprayed with antibiotics). If you think about that for a second\u2014the connection between taking antibiotics and gaining weight\u2014you\u2019ll have an \u201caha\u201d moment. Big agribusiness gives antibiotics to livestock not to prevent or cure infection, but rather to deliberately change the animals\u2019 intestinal bacteria to the species associated with obesity. Now go one step further: If you\u2019re eating this antibiotic-laced meat, your intestinal bacteria will change and be identical to that of the fatted calf.<\/li><li><b>Increasing the fiber in your diet<\/b>.\u00a0 Recognize there are many kinds and your microbiome enjoys a varied menu.<\/li><li><b>Relaxing the sanitary regime in your home<\/b>. Let your kids play in the dirt and don\u2019t wipe everything down with hand sanitizers and antibacterial wipes (my mother would faint at this suggestion). However, washing hands with soap and water after using the toilet and before meals are non-negotiable.<\/li><li><b>Cutting back on or eliminating processed, low-fiber foods<\/b>.<\/li><li><b>Adding more fermented foods to your meals<\/b>: yogurt, kimchi, sauerkraut, and other pickled veggies. Beware\u2014living foods don\u2019t sit in jars on grocery store shelves. But they\u2019re <a href=\"https:\/\/www.wildfermentation.com\/\" target=\"_blank\" rel=\"noreferrer noopener nofollow\">easy to make yourself<\/a>.<\/li><li><b>Eating more complex carbs<\/b> (fruit, veggies, whole grains, legumes) and cooking them lightly to preserve the fiber content.<\/li><\/ul>\n\n\n\n<p>I must close with an anecdote about deliberate physician ignorance.<\/p>\n\n\n\n<p>Medical practices all over the country are routinely audited by insurance companies ever on the lookout for their version of fraud. Several years ago, we were included with other practices in an \u201caudit sweep\u201d by a major carrier, literally hunting down physicians who had diagnosed their patients with intestinal dysbiosis (unhealthy bacterial balance), leaky gut syndrome, and food sensitivities. One by one, our practices were called to insurance headquarters to explain what we were doing and why we shouldn\u2019t be cited for fraud. Since physicians in the employ of insurance companies are definitely not the best and the brightest (you\u2019ll never see an insurance medical director listed in Chicago\u2019s Top Doctors), each practice carefully explained all about dysbiosis, leaky gut, and so forth to his obviously anti-intellectual ennui.<\/p>\n\n\n\n<p>Finally he sneered, \u201cYou should return all the money you\u2019ve charged us for these tests. Our consultant gastroenterologist says this is all nonsense. Don\u2019t you dare order any of these tests again or you\u2019ll be in serious trouble.\u201d<\/p>\n\n\n\n<p>So, if you\u2019re one of our patients and we suggest that your problem merits getting tested for some aspect of leaky gut and we explain that these tests will be self-pay, out-of-pocket, well, now you know why.<\/p>\n\n\n\n<p>Be well,<br><em>David Edelberg, MD<\/em><\/p>\n","protected":false},"excerpt":{"rendered":"<p>If you read the history of alternative medicine in the US, you\u2019ll be as intrigued as I was by its preoccupation with your gastrointestinal system and feces. Diet, digestion, absorption, elimination, and possessing a wondrous \u201cinner hygiene\u201d were recurring themes originating in the late 19th century, when Kellogg\u2019s cereals were the mainstay health food at [&hellip;]<\/p>\n","protected":false},"author":2087,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[2,29,45,2331,3,43],"tags":[930,1509,1510,1511,1512,1513,1342,988],"class_list":["post-5704","post","type-post","status-publish","format-standard","hentry","category-blog","category-digestion","category-f","category-internal-medicine","category-knowledge-base","category-nutrition-nutritional-supplements-vitamins-herbal-remedies","tag-crohns-disease","tag-dysbiosis","tag-fermented-foods","tag-hyperpermeability","tag-michael-polin","tag-microbiome","tag-probiotics","tag-ulcerative-colitis"],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v24.9 - 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